TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis
Identifieur interne : 001731 ( Main/Exploration ); précédent : 001730; suivant : 001732TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis
Auteurs : Stein Aerts [Belgique] ; Peter Van Loo [Belgique] ; Gert Thijs [Belgique] ; Herbert Mayer [Autriche] ; Rainer De Martin [Autriche] ; Yves Moreau [Belgique] ; Bart De Moor [Belgique]Source :
- Nucleic Acids Research [ 0305-1048 ] ; 2005-07-01.
Abstract
We present the second and improved release of the TOUCAN workbench for cis-regulatory sequence analysis. TOUCAN implements and integrates fast state-of-the-art methods and strategies in gene regulation bioinformatics, including algorithms for comparative genomics and for the detection of cis-regulatory modules. This second release of TOUCAN has become open source and thereby carries the potential to evolve rapidly. The main goal of TOUCAN is to allow a user to come to testable hypotheses regarding the regulation of a gene or of a set of co-regulated genes. TOUCAN can be launched from this location: http://www.esat.kuleuven.ac.be/~saerts/software/toucan.php.
Url:
DOI: 10.1093/nar/gki354
Affiliations:
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Acids Research</title><title level="j" type="abbrev">Nucl. Acids Res.</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><publisher>Oxford University Press</publisher><date type="published" when="2005-07-01">2005-07-01</date><biblScope unit="volume">33</biblScope><biblScope unit="supplement">suppl_2</biblScope><biblScope unit="page" from="W393">W393</biblScope><biblScope unit="page" to="W396">W396</biblScope></imprint><idno type="ISSN">0305-1048</idno></series><idno type="istex">8753078D78532410122AB9170AE54357411F1010</idno><idno type="DOI">10.1093/nar/gki354</idno><idno type="local">gki354</idno></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0305-1048</idno></seriesStmt></fileDesc><profileDesc><textClass></textClass><langUsage><language ident="en">en</language></langUsage></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">We present the second and improved release of the TOUCAN workbench for cis-regulatory sequence analysis. 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